Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Variable region not considered active region by HaplotypeCaller


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    Genevieve Brandt (she/her)

    Hi Veronica, could you update your GATK version? We have made a lot of changes to this tool since and you might find much better results with an update.

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