Dear GATK team,
Hi I'm Stella.
I have a question.
I have 400 BAMs comprised of 200 healthy people BAMs, and 200 Cancer patients BAMs.
For 400 BAMs, I ran HaplotypeCaller on each BAMs.
In this cases, is it right to put the whole BAMs (n=400) together by GenomicsDBimport?
Or is it right to combine healty BAMs (n=200) and cancer BAMs (n=200) separately?
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