Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Error using output of ScatterIntervalsByNs by SplitIntervals

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    Genevieve Brandt (she/her)

    Hi Kristian Unger , it seems as though you are supplying an interval "@HD VN:1.6 SO:coordinate" that cannot be used. Please check all your intervals and make sure they are valid. 

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