Any recommended criteria for filtering Mixed and MNP variants with VariantFiltration

Follow

Phongphak Khongthon

• July 06, 2020 12:48

Hello,

I'm trying to search for any recommendation in filtering Mixed and MNP variants, but I found nothing. So do you guys have any idea about the criteria that are suitable for these kind of variants, especially MIXED, since SNP and INDEL have different criteria.

Thanks!

0

• 

  Bhanu Gandham

  • July 07, 2020 17:51

  Hi ,

  The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlog to work through when we have the capacity.

  Please continue to post your questions because we will be mining them for improvements to documentation, resources, and tools.

  We cannot guarantee a reply, however, we ask other community members to help out if you know the answer.

  For context, check out our support policy.

   

  0

  Comment actions Permalink
• 

  Marsha Wallace

  • September 23, 2021 11:57

  Would be great to have an answer to this question.

  0

  Comment actions Permalink

Please sign in to leave a comment.