Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Inquiry about the GATK Best Practices for variant calling on RNAseq


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    Genevieve Brandt (she/her)

    Hi Benjamin Hing, I am not sure specifically what hyperlink you are referring to, but we have a new documentation website. The best practices for RNA seq short variant discovery is here . We also have the legacy forum available here, you can check and see if the page you are thinking of is there.

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