Variant Discovery in High-Throughput Sequencing Data
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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery
and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
I am trying to run Mutect2 (github.com/broadinstitute/gatk/mutect2:22.214.171.124) workflow in Terra, but it seems to be failing at Funcotator because annotated.maf.idx file is not being created? I am not sure why. The whole log is here: