Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

GenomicsDBImport works for only the first chromosome



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    Bhanu Gandham



    Can you please share:

    1. the entire log
    2. stdout for GenomicsDBImport command
    3. stdout for slurm
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    Hello Bhanu,

    Thanks a lot for your response. Actually I can't use GATK4 anymore and I don't have the things that you'd like to see. I should have deleted my previous post before, I am very sorry.

    Thanks again.

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