Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Can't open VCF File

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    Bhanu Gandham

    Are you able to view the file? Looks like the tool is not able to find this file. Can you try opening it and ensure that the file path you provided is accurate.

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    Sanat Mishra

    I ran this outside Docker and it worked. I think there was some problem with reading files when inside the container.

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