Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

something wrong with MarkDuplicatesSpark

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    Bhanu Gandham

    Hi,

     

    We don't support spark 3 yet. We will soon (maybe in the next few months). But for now please switch to spark 2 and that should resolve this issue.

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