Can you please provide
a) GATK version used :22.214.171.124
b) Exact GATK commands used :gatk --java-options "-XX:ParallelGCThreads=2 -Xmx4g" HaplotypeCaller -R ref.fasta -I in.bam -O out.g.vcf.gz -ERC GVCF 2>>out.err
I run Haplotypecaller for over 40 hours and it was broker due to some host server problems. Can I continue the same run?
Thanks for your time.
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