How is tumor_f in Funcotator MAFAnswered
Can you please provide
a) GATK version used
b) Exact GATK commands used
c) The entire error log if applicable.
Using most recent GATK docker.
tumor_f is not one of the columns in the MAF specification. How is it computed?
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I also want to know what's the meaning of ‘tumor_f ’？
Hi Wenhong Jiang,
Please see this forum post: https://gatk.broadinstitute.org/hc/en-us/community/posts/360077993111-Tumor-and-Normal-Read-Frequency-vs-tumor-f-value-in-MAF-
Let me know if you have any further questions.
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