Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

gatk4-mitochondria-pipeline Problems

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    Beri Shifaw

    Hi Valentin,

    That repo has been archived so you'll want to obtain the version of the workflow from the gatk repo here. If you would like to user gatk4.1.7.0 try ah_mt_fixspaces_wdl branch which contains a bug fix for that release.

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