Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

gatk4-mitochondria-pipeline Problems


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    Hi Valentin,

    That repo has been archived so you'll want to obtain the version of the workflow from the gatk repo here. If you would like to user gatk4.1.7.0 try ah_mt_fixspaces_wdl branch which contains a bug fix for that release.

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