Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

GATK 4.1.7.0 error java.lang.IllegalArgumentException: malformed input off : 17635906, length : 1

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    Tiffany Miller

    Hi Sibelle, If you run these commands using 4.1.4.1 on the "other cluster", does it run smoothly (the one where the bams weren't generated?)?

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