Where are LearnReadOrientationModel docs?
I noticed that there are no docs for LearnReadOrientationModel for Mutect explaining what it does and how it works. Is there a reason for this?
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Hi ,
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vctrymao Please see the supplementary material, Section III, subsection G, of our paper: https://www.biorxiv.org/content/10.1101/861054v1. We also maintain current documentation about methods in the gatk repo on github: https://github.com/broadinstitute/gatk/blob/master/docs/mutect/mutect.pdf.
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