Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Error with GATK 4 and R gsalib

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    Bhanu Gandham

    Hi,

     

    Follow the info provided in the readme here: https://github.com/broadinstitute/gatk/  for installation and pre-packaged docker information.

     

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    Oscar Sotolongo-Grau

    SOLVED. There was an error in previous steps and bam files were corrupted. Everything goes right now. You can close the ticket or whatever.

    Notice that gatk docker images could converted to singularity without problem.Nice job.

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