Thanks very much!

a) picard, cloned (git clone https://github.com/broadinstitute/picard.git) 2020/03/30

b) from within picard, ,/gradlew test 

c) It's too large to attach complete scan. The error portion is here:

...

INFO 2020-03-30 21:17:49 MarkDuplicates Getting Memory Stats.
Test: Test method testBulkFragmentsWithDuplicates[0](.sam)(picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted) produced standard out/err: INFO 2020-03-30 21:17:49 MarkDuplicates Before output close freeMemory: 743473984; totalMemory: 1073741824; maxMemory: 2147483648

INFO 2020-03-30 21:17:49 MarkDuplicates Before output close freeMemory: 743473984; totalMemory: 1073741824; maxMemory: 2147483648
Test: Test method testBulkFragmentsWithDuplicates[0](.sam)(picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted) produced standard out/err: INFO 2020-03-30 21:17:49 MarkDuplicates Closed outputs. Getting more Memory Stats.

INFO 2020-03-30 21:17:49 MarkDuplicates Closed outputs. Getting more Memory Stats.
Test: Test method testBulkFragmentsWithDuplicates[0](.sam)(picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted) produced standard out/err: INFO 2020-03-30 21:17:49 MarkDuplicates After output close freeMemory: 743613608; totalMemory: 1073741824; maxMemory: 2147483648

INFO 2020-03-30 21:17:49 MarkDuplicates After output close freeMemory: 743613608; totalMemory: 1073741824; maxMemory: 2147483648
Test: Test method testBulkFragmentsWithDuplicates[0](.sam)(picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted) produced standard out/err: [Mon Mar 30 21:17:49 CEST 2020] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 0.01 minutes.

[Mon Mar 30 21:17:49 CEST 2020] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 0.01 minutes.
Test: Test method testBulkFragmentsWithDuplicates[0](.sam)(picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted) produced standard out/err: Runtime.totalMemory()=1073741824

Runtime.totalMemory()=1073741824
Running Test: Test method testBulkFragmentsWithDuplicates[1](.bam)(picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted)
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x000000012dbbaea7, pid=98171, tid=41219
#
# JRE version: Java(TM) SE Runtime Environment (11.0.1+13) (build 11.0.1+13-LTS)
# Java VM: Java HotSpot(TM) 64-Bit Server VM (11.0.1+13-LTS, mixed mode, tiered, compressed oops, g1 gc, bsd-amd64)
# Problematic frame:
# C [libgkl_compression14680550242013969791.dylib+0x6ea7] deflate_medium+0x867
#
# No core dump will be written. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
#
# An error report file with more information is saved as:
# /Users/kelly.swarts/Code/Intellij/git/picard/hs_err_pid98171.log
#
# If you would like to submit a bug report, please visit:
# http://bugreport.java.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#

Gradle suite > Gradle test > picard.sam.markduplicates.MarkDuplicatesTestQueryNameSorted > testBulkFragmentsWithDuplicates[1](.bam) SKIPPED
Results: SUCCESS (647 tests, 646 successes, 0 failures, 1 skipped)

> Task :barclayTest FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':barclayTest'.
> Process 'Gradle Test Executor 14' finished with non-zero exit value 134
This problem might be caused by incorrect test process configuration.
Please refer to the test execution section in the User Manual at https://docs.gradle.org/5.6/userguide/java_testing.html#sec:test_execution

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

BUILD FAILED in 4m 26s
5 actionable tasks: 1 executed, 4 up-to-date

Publishing a build scan to scans.gradle.com requires accepting the Gradle Terms of Service defined at https://gradle.com/terms-of-service. Do you accept these terms? [yes

Gradle Terms of Service accepted.

Publishing build scan...
https://gradle.com/s/yqu2ui3iq3be6