I'm using the latest version of svtoolkit (r1949) to call CNV with WGS data. It threw an error as follow:
##### ERROR MESSAGE: No read depth coverage file found in metadata directory
But I ran preprocessing pipeline successfully. There is depth directory in metadata... And I also noticed that in 1000G_phase1_20101123_mdv1/metadata there is a file named depth.dat but it was not in metadata directory which was produced by preprocessing pipeline...
So I'm doubting if it's a bug of the latest version?
Thank you very much.
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