a) GATK version used
b) Exact GATK commands used
i want to know option -L in BaseRecalibrator
In fivedollar-genome-analysis pipeline. I ran BaseRecalibrator
then I have a question
-L option is file that made by gatk SplitIntervals or use wgs_calling_regions.hg38.interval_list in gatk resource bundle??
Thank you for listening to my concerns.
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