Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Out of memory error using OpenJDK vs Oracle JDK for CNV-LOH



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    You may want to use OpenJDK Hotspot instead of OpenJ9. 

    Can you check with AdoptOpenJDK?



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    Jose Arcadio Buendia

    Switching to OpenJDK Hotspot solved the issue!

    Thanks you!

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    Tarek Faham

    I am facing the same problem when switching from Oracle JDK to java-1.8.0-openjdk- I will try OpenJDK Hotspot.

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