Variant Discovery in High-Throughput Sequencing Data
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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery
and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
How do I input two separate paired-end fastq files into the GATK pipeline? Do I use an interleave-fastq?