How do I input two separate paired-end fastq files into the GATK pipeline? Do I use an interleave-fastq?
AnsweredCan you please provide
a) GATK version used
4.0.3.0
b) Exact GATK commands used
c) The entire error log if applicable.
-
Hi ,
The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlog to work through when we have the capacity.
Please continue to post your questions because we will be mining them for improvements to documentation, resources, and tools.
We cannot guarantee a reply, however, we ask other community members to help out if you know the answer.
For context, check out our support policy.
-
Hi Lauren Fedenia,
What tool are you planning to use with the FASTQ file(s)?
Kind regards.
Please sign in to leave a comment.
2 comments