Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Joint calling on individual gvcfs vs merged gvfs


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    Bhanu Gandham

    Hi gen1234


    We do not support GATK3 anymore. Please upgrade to the latest GATK4.1.4.0 version.

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