Can you please provide
a) GATK version used
b) Exact GATK commands used
c) The entire error log if applicable.
I am trying to implement BaseRecalibrator where I output the log of the file to a separate file. In the past this could be done using -log_to_file, but I don't see that option for GATK 184.108.40.206. Is there a way I can do this?
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