Hi. I'm student who study bioinformatics.
I make some vcf files using GATK3.6 tumor only mode.
I wonder about 'clustered_events' filter's definition.
According to the vcf meta-information line,
##FILTER=<ID=clustered_events,Description="Clustered events observed in the tumor">
And I got the information that 'clustered event' is several mutations that are close together.
What is the criteria about 'close together'?
How close does it take to be perceived as 'clustered'?
please answer about this, thanks!
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