Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

1 comment

  • Avatar
    Bhanu Gandham

    Hi efratushava

    It means that if there is a bam indexed file(.bai file), it will run faster. You don't need to input an index file, the index file just needs to be in the same location as the bam file.

    0
    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk