I am using GATK v3.5, and I am trying to run Mutect2 on a tumor sample with a panel of normals (there is no normal sample). I have run it successfully (gotten VCF output) but I do not see any header for the panel where the normal sample would be. So my header looks like:
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
Is there a way to include this somehow?
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