FastqToSam error when using paired reads

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malonzm1

• September 13, 2024 09:45

Hi,

When I use FastqToSam with paired reads, I get the following exception:

`fastq2sam_13.o:picard.PicardException: In paired mode, read name 1 (SRR4785995.1.1) does not match read name 2 (SRR4785995.1.2)`

The read names are the same except for the last suffix. Can you recommend a fix for this error?

Thanks and good day.

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  Gökalp Çelik

  • September 13, 2024 13:20

  Hi malonzm1

  Can you check the number of reads in each pair? Those 2 should match if not then I have more suggestions to add.

   

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