Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Calculating variations between two tumor states

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    Gökalp Çelik

    Hi Jaime Alvarez Benayas

    This is probably not a single command job but may require additional steps for calling, filtering merging and comparing for both samples. This goes beyond our scope of solving GATK related problems and issues. 

    Regards. 

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