Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Interval issue with Mouse Variant Calling BaseRecalibrator


1 comment

  • Avatar
    Gökalp Çelik

    Hi Michael Field

    Can you try running this command with at least version to get a better error message? Additionally if you can add the following parameter to command that may bring more detailed error message.

    --java-options '-DGATK_STACKTRACE_ON_USER_EXCEPTION=true'


    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk