Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Hello, gatk wont /can't read my file . Despite double checking and I can see the file directory and even the recal_data.table file created by the first line of command pasted below.



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    Gökalp Çelik

    Looks like your variable is set with curly brackets on each side


    If you change it to


    it should be fine. 

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    Ademola Aina

    Perfect! Thank you!

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