Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

GenomicsDBImport Couldn't read file. Error was: Failure while waiting for FeatureReader to initialize with exception:


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    Gökalp Çelik

    Hi ScaphiopusRunner

    Your sample name map file /GATK/gdbi/gdbi/vcf_files_list.txt seems to contain invalid entries. Can you check and fix invalid entries and try running again. Tool is looking for an input file that does not exist.

    Caused by: java.nio.file.NoSuchFileException: /GATK/gdbi/File
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