Cromwell GCP Batch launch errors
I am attempting to run test wdl scripts with cromwell v86 and Google Batch. I have successfully run multiple jobs in Google Lifesciences API, and edited my LSAPI conf file to move to batch. However, i keep getting the following error in runs:
docker: invalid spec: /mnt/disks/cromwell_root:/mnt/disks/cromwell_root:: empty section between colons.
Is a variable not being set in cromwell, is this user error on my part, or is perhaps something else going on?
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Hi Ben Aga
Here at the GATK forum we try to find answers to problems and questions directly related to GATK engine and tools. For cromwell and Google Cloud questions we recommend other sources however here is a small suggestion. You might have an accidental space put between tabs or columns. Can you check the format of your file?
Regards.
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