Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

ValueError in DetermineGermlineContigPloidy



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    Gökalp Çelik

    Hi Isadora Machado Ghilardi

    Looks like your contig priors file is not tab separated. Make sure that your columns are tab separated and your workflow should work fine. 

    I hope this helps. 

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    Isadora Machado Ghilardi

    Yes, the problem was that the spaces were not separated with a tab.

    Thank you so much for your help! 

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