Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

VariantRecalibrator resource



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    Gökalp Çelik

    Hi Vincenzo Landi

    There are data sources available for sheep within Ensembl, iSheep and some other related databases. You mileage may vary however if these are the sole sources for your organism we think it is a good way to start with these.

    Here is what I could locate by checking dbSNP archives. I am sure google will get even more resources. 

    Please pay attention to the reference genome that you are using to map your reads as compatibility with your reference genome and these external sources is utmost important when getting your workflows to completion properly. 

    I hope this helps. 

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    Vincenzo Landi

    Gökalp Çelik thank you very much! really appreciated!


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