Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Problem with CollectRnaSeqMetrics


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    Gökalp Çelik

    Hi Nahdia Afiifah Abdul Jalil

    Your interval files seem to be missing required fields. Can you check whether your fields are separated by tabs?. If not you need to add {OFS="\t"} to your awk command to make it so. 

    I hope this helps. 

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