REQUIRED for all errors and issues:
a) GATK version used:

4.3.0.0

b) Exact command used: 

set=CB
ref=V_macrocarpon_Stevens_v1
gatk --java-options "-Xmx12g" GenotypeGVCFs \
   -R ${ref}.fasta \
   -V gendb://CB \
   -O ${set}.vcf.gz

c) Entire program log:
I skipped through most of the traversal but I got he following error at the end. I've never had this error before and I can't anything out about it. Is it just a memory issue? I've tried with "-Xmx4g" and "-Xmx12g" and it stops at the same place

Using GATK jar /home/barlex/miniconda3/envs/snp/share/gatk4-4.3.0.0-0/gatk-package-4.3.0.0-local.jar
Running:
    java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx12g -jar /home/barlex/miniconda3/envs/snp/share/gatk4-4.3.0.0-0/gatk-package-4.3.0.0-local.jar GenotypeGVCFs -R V_macrocarpon_Stevens_v1.fasta -V gendb://CB -O CB.vcf.gz
13:41:10.771 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/barlex/miniconda3/envs/snp/share/gatk4-4.3.0.0-0/gatk-package-4.3.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
13:41:10.991 INFO  GenotypeGVCFs - ------------------------------------------------------------
13:41:10.992 INFO  GenotypeGVCFs - The Genome Analysis Toolkit (GATK) v4.3.0.0
13:41:10.992 INFO  GenotypeGVCFs - For support and documentation go to https://software.broadinstitute.org/gatk/
13:41:10.992 INFO  GenotypeGVCFs - Executing as barlex@DESKTOP-VDKQE0G on Linux v4.4.0-19041-Microsoft amd64
13:41:10.992 INFO  GenotypeGVCFs - Java runtime: OpenJDK 64-Bit Server VM v1.8.0_382-b05
13:41:10.992 INFO  GenotypeGVCFs - Start Date/Time: March 1, 2024 1:41:10 PM PST
13:41:10.992 INFO  GenotypeGVCFs - ------------------------------------------------------------
13:41:10.992 INFO  GenotypeGVCFs - ------------------------------------------------------------
13:41:10.993 INFO  GenotypeGVCFs - HTSJDK Version: 3.0.1
13:41:10.993 INFO  GenotypeGVCFs - Picard Version: 2.27.5
13:41:10.993 INFO  GenotypeGVCFs - Built for Spark Version: 2.4.5
13:41:10.993 INFO  GenotypeGVCFs - HTSJDK Defaults.COMPRESSION_LEVEL : 2
13:41:10.993 INFO  GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
13:41:10.994 INFO  GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
13:41:10.994 INFO  GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
13:41:10.994 INFO  GenotypeGVCFs - Deflater: IntelDeflater
13:41:10.994 INFO  GenotypeGVCFs - Inflater: IntelInflater
13:41:10.994 INFO  GenotypeGVCFs - GCS max retries/reopens: 20
13:41:10.994 INFO  GenotypeGVCFs - Requester pays: disabled
13:41:10.994 INFO  GenotypeGVCFs - Initializing engine
13:41:17.347 INFO  GenomicsDBLibLoader - GenomicsDB native library version : 1.4.3-6069e4a
13:41:32.188 info  NativeGenomicsDB - pid=30804 tid=30805 No valid combination operation found for INFO field InbreedingCoeff  - the field will NOT be part of INFO fields in the generated VCF records
13:41:32.188 info  NativeGenomicsDB - pid=30804 tid=30805 No valid combination operation found for INFO field MLEAC  - the field will NOT be part of INFO fields in the generated VCF records
13:41:32.188 info  NativeGenomicsDB - pid=30804 tid=30805 No valid combination operation found for INFO field MLEAF  - the field will NOT be part of INFO fields in the generated VCF records
13:41:32.430 INFO  GenotypeGVCFs - Done initializing engine
13:41:32.508 INFO  ProgressMeter - Starting traversal
13:41:32.511 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
13:41:55.132 INFO  ProgressMeter -           chr1:88507              0.4                  1000           2652.4
15:27:37.716 INFO  ProgressMeter -         chr5:6821992            106.1               3392000          31973.8
[TileDB::ReadState] Error: Cannot read tile from file; Memory map error.
terminate called after throwing an instance of 'VariantStorageManagerException'
  what():  VariantStorageManagerException exception : VariantArrayCellIterator increment failed
TileDB error message : [TileDB::ReadState] Error: Cannot read tile from file; Memory map error