updatef version of pathseq reference database

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Ivan Molineris

• February 19, 2024 09:54

Dear GATK team,

A reference microbiome dataset to be used in the PahtSeq pipeline is available there gs://gatk-best-practices/pathseq/resources/ but in gs://gatk-best-practices/pathseq/resources/pathseq_bundle_readme.txt the date of building is 2017.

To your knowledge is there any updated version of this pre-built reference?

 

Best regards

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  Gökalp Çelik

  • April 22, 2024 15:13

  Hi Ivan Molineris

  That is the most current one we have. 

  Regards. 

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