Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Link checking for the GATK documentation


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    Can Kockan

    Hi Mario Fasold , I completely agree with you regarding the broken links. I've relayed this post and now there's an issue on the GATK repo:

    It probably will take some time to fix these broken links scattered across the docs due to the bandwidth of the GATK team, but I support your suggestion to use something like lychee. I'll find out if there's any reason why it shouldn't be added to the CI system.

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