Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Somatic mutation calling using MuTect2 with blood WGS and tumor WES samples


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    David Benjamin

    HYUN BIN CHO This will work very well, with no preprocessing needed.  In fact, it will probably help avoid the occasional false positive near low-coverage tails of baited intervals.

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