Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Funcotator download

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    Can Kockan

    Could you try:

    gatk FuncotatorDataSourceDownloader --germline --validate-integrity --hg38 --extract-after-download

    and see if that works?

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    Elizabeth Cattaneo

    Thanks!

     

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