Where can I download Counts of Reads files?

Follow

Taras Levchuk

• January 16, 2024 20:06
• Edited

REQUIRED for all errors and issues:
a) GATK version used:
b) Exact command used:
c) Entire program log:

Can somebody provide already generated Counts of Reads files in tsv format generated from bam files covering entire human chromosomes? (not only 22, X, Y for tutorials)
It seems if I have these tsv files, it is possible to generate the cohort model to call germline copy number variants without actually downloading the bam files.

 

0

• 

  SkyWarrior

  • January 18, 2024 12:03

  Hi Taras Levchuk

  I don't think these files are available for public use by anyone therefore if you need to generate a model for CNV calling you need to use your own resources to generate them from your own bam files or public sequence data that is equivalent of what you are working on in the lab. 

  Regards. 

  0

  Comment actions Permalink

Please sign in to leave a comment.