Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Where can I download Counts of Reads files?


1 comment

  • Avatar

    Hi Taras Levchuk

    I don't think these files are available for public use by anyone therefore if you need to generate a model for CNV calling you need to use your own resources to generate them from your own bam files or public sequence data that is equivalent of what you are working on in the lab. 


    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk