Non-human reference genome metadata building

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子玮 刘

• December 27, 2023 09:35

I'm trying to do some analysis on my own NON-human genome. So i followed the guide from https://software.broadinstitute.org/software/genomestrip/node_ReferenceMetadata.html to build my own reference genome metadata.

But when I tried to build a reference.svmask.fasta, I realized that i cannot find the mentioned utility ComputeGenomeMask anywhere. Where can i find the utility and build a svmast fasta file for my own? And documentations of genomestrip mentioned "*documentation for ComputeGenomeMask" repeatedly, please tell me where is the document for this utility.

Thank you.

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  Laura Gauthier

  • January 08, 2024 20:33

  Hi @子玮 刘

  We don't support Genome Strip, which is not part of GATK. You may have better luck using contact info from the Genome Strip website.

  -Laura

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