Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

why is GenotypeGVCF so time-consuming?


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    David Roazen

    Hi ly y,

    Can you please provide more information on how long GenotypeGVCFs is taking for you, how large your input VCF is, and the total amount of memory available on your machine?



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