Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

PathSeqBuildReferenceTaxonomy is returning an error as `A USER ERROR has occurred: Bad input: Expected taxonomy ID to be an integer but found "4OWNbacteria|complete"`


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    Mark Walker

    Hi Abhilash Tripathi,

    I wasn't able to reproduce your error with RefSeq-release221.catalog.gz. Is it possible your file is corrupted? The md5sum I get is e600678fde0c8656012541890b2d8b31 if you want to check.

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