Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Funcotator 1.8 not working


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    Gökalp Çelik

    Hi A. Brink

    The resource file version 1.8 was created and updated for by changes introduced in GATK which will be released soon therefore the error message also indicates the incompatibility of the version 1.8 and current GATK If you still wish to use the newest resource you may try building GATK from the master branch of github repository or you may use the nightly docker builds of GATK both of which already includes funcotator updates for the resource bundle 1.8. Beware that this version is still being tested and although our team has tested it quite rigorously there may be edge cases uncaught and if you see any such error please let us know from here or open an issue in the github issues page so that it can be addressed quickly until GATK release. 

    I hope this helps. 

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