Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

ASEReadCounter output for Indels is incorrect


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    Ricky Magner

    Hi Akshay,

    Thanks for your post about this tool. As mentioned in the documentation, the tool currently only supports SNPs. It's possible that in the future the GATK team might consider extending functionality to also work with INDEL data with a bit of modification, but for the moment this is not possible.



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