Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

PathSeqPipelineSpark multiple cpus


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    Gökalp Çelik

    Hi Caitlin Newman

    Can you share your command line? Depending on the spark-master certain rules may apply on your cluster. Local execution requires

    --spark-master local[number of threads] 

    to ensure parallel execution. 

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