I'm trying to get started using the cnv_germline_case_workflow.wdl from here: https://github.com/broadinstitute/gatk/tree/master/scripts/cnv_wdl/germline
One of the required parameters is:
CNVGermlineCaseWorkflow.contig_ploidy_model_tar-- Path to tar of the contig-ploidy model directory generated by the DetermineGermlineContigPloidyCohortMode task.
Does that mean we have to run this tool before we can run the wdl??
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