I would like to run GATK-SV on 30 WGS samples on our local HPC (it is pre-installed), where we can request from one core (4gb) to 16 cores (64GB of RAM). We can also request multiple instances of the 16 core version.
What is the minimum RAM/number of cores required to run GATK SV on one sample vs 30 samples?
Additionally, typically what size are the output VCF files and intermediate files (we also need to request storage space).
Any help would be much appreciated.
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