Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Annotation for variant calling

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    Gökalp Çelik

    Hi Rami Kheireddine

    Looks like you are using java 1.8 releases. GATK 4.4.0.0 release requires java 17 therefore you may need to upgrade your java runtime installation to 17. 

    Regards. 

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